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Hi! I am Ruijie (Ray) Zhu

PhD student in the Pritzker School of Molecular Engineering @ UChicago ( - )

NSF-NRT AI-enabled Molecular Engineering of Materials and Systems (AIMEMS) for Sustainability Trainee ( - )

Polsky I-Corps Fall 2024 cohort (-)

Professional Development Chair @ Society of Asian Scientists and Engineers (SASE) UChicago Chapter (-Pres.)

Computational Chemistry and Materials Science (CCMS) Summer Institute Fellow @ LLNL ( - )

Predoctoral Appointee @ Argonne ( - )

Research Aide Technical @ Argonne ( - )


M.S. in Materials Science and Engineering @ Northwestern ( - )

B.S. in Materials Physics @ Shanghai University ( - )


Marathon runner 3:34:53 | Amateur Boxer | Hackathon Lover


Check out my Medium blog, and a list of my running race results

Ruijie (Ray) Zhu

Research Interest

Developing agentic AI for biological systems

Computational design of metal-organic frameworks (MOFs) and covalent organic frameworks (COFs) for carbon capture and water harvesting

(Previous) Combining high-throughput DFT calculation and machine learning to accelerate the search for thermodynamically stable inorganic crystalline materials

(Previous) Materials representations and graph neural networks

Computational Materials Science | High-throughput DFT Calculation | Machine Learning

News

2026

- I presented a poster at NRT annual meeting in Colorado School of Mines

- Our PALM: Physics-Aware Leakage Minimizer received AIMEMS NRT Team Funding

2025

- I attended the CECAM-US-CENTRAL 2025 Conference Machine Learning Advances for Molecular and Materials Property Prediction at University of Notre Dame

- I started serving as a reviewer for Machine Learning Science and Technology journal

- Our team PolymerSphere started working on Open Polymer Challenge

- I attended AI4Chemistry Summit at NYU

- Our collaborative paper "Bayesian Optimization Hackathon for Chemistry and Materials" is now available on ChemArxiv [Link]

- I started working as a research assistant in Dr. Arvind Ramanathan's lab at Argonne

- I finished Life Time Chicago Spring Half in the 98th place with a finish time of 1:29:57

- Our team, Catalyze Q, has been featured on Polsky website Link

- Our paper "Cartesian Equivariant Representations for Learning and Understanding Molecular Orbitals" is now available on ChemRxiv Link

- I participated in AI + Science hackathon hosted by Data Science Institute at UChicago

- I started serving as Professional Development Chair at Society of Asian Scientists and Engineers (SASE) UChicago Chapter

- Our paper "A generative artificial intelligence framework based on a molecular diffusion model for the design of metal-organic frameworks for carbon capture" is included in Communications Chemistry's 2024 Editors' Highlights Collection Link

- I started working as a research assistant in PME department at UChicago

- Our paper "Wide-ranging predictions of new stable compounds powered by recommendation engines" is now available on Science Advances Link

2024

- I visited UC Berkeley to discuss about my ongoing research project

- Our collaborative paper "Reflections from the 2024 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry" is now available on Arxiv! [Link]

- I attended Chem AI satellite events Link

- I finished my first marathon in 3:34:53 during the Philadelphia Marathon weekend Certificate Link

- The Climate Frontiers: Energy and Climate event was hosted at UChicago Link

- I attended 2024 ALCF Hands-on HPC Workshop at Argonne Link

- The first session of I-Corps program at the Polsky Center started

- I am officially a mentor in the Global Mentor Network program at UChicago I-House Link

- I attended the AI for Multidisciplinary Exploration and Discovery (AIMED) Workshop on Heterogeneous Catalysis workshop Link

- I attended the ALCF Intro to AI-driven Science on Supercomputers workshop Link

- I finished my first half marathon in 1:43:25 during 2024 HOKA Life Time Chicago Half Marathon Link

- I presented a poster on behalf of the Gagliardi group during PME orientation week

- I presented a poster at CD4DC all hands meeting Link

- Our team, CatalyzeQ, has been selected to participate in the Polsky I-Corps program Link

- I attended the 1st Midwest MOF conference Link

- I finished in the 28th place (39:29) in the Run Mag Mile Chicago 10k run Link Certificate

- I started as NSF-NRT AIMEMS Trainee Link

- I attended the NCHC end-to-end LLM bootcamp hosted by National Center for High-performance Computing Link

- I was accepted as NSF-NRT AIMEMS trainee Link

- I attended "AI For Science and Nobel Turing Challenge Initiative Conference" Link

- I attended the Artificial Intelligence for Materials Science (AIMS) workshop at NIST Link

- I attended the "Frontiers on Computational Reaction Prediction" workshop hosted by CECAM Link

- I attended "Summer Virtual Workshop on Machine Learning Performance and Scalability" hosted by NCA Delta Project Office [Link]

- I attended the SciFM Summer School organized by University of Michigan and Argonne Link

- Our team (Agent 47 Materials) won the 1st place in AI4Science hackathon Link Slides

- I attended "Crash Course in Supercomputing" hosted by LBNL Link

- Our team advanced to the final round of AI4Science hackathon Code Website

- I attended "Expanding AI and next generation simulation tools to accelerate scientific discovery" hosted by C&EN and Microsoft Link

- I attended "Future of Materials Discovery Workshop" hosted by University College London Link

- I completed my first paper review for Transactions on Knowledge Discovery from Data journal

- I participated in the AI4S Cup - OpenLAM Challenge - LAM Crystal Philately Link

- I joined Catalyst Design for Decarbonation Center (CD4DC) funded by DOE Link

- Our work on appeared on DOE NETL Carbon Capture News Letter June 2024 Link

- I (remotely) attended the AI≡Science: Strengthening the Bond Between the Sciences and Artificial Intelligence Workshop hosted by the Simons Institute Link

- I scored 98 in TOPIK II 2024 [Link]

- I wrote a blog post titled "Hackathon 101" [Link]

- I wrote a blog post titled "How we won reincarnate prize for LLM hackathon for applications in materials and chemistry 2024" [Link]

- I attended the "Data Sciences for Mesoscale and Macroscale Materials Models" workshop organized by Institute of Mathematics and Statistical Innovation (IMSI) at University of Chicago Link

- Our team won the "reincarnate prize" of LLM hackathon Medium Code

- We successfully completed the AI+Science hackathon Code Slides Certificate

- I participated in Large Language Model (LLM) hackathon for applications in chemistry and materials science Link

- I participated in AI+Science hackathon organized by the Data Science Institute (DSI) at University of Chicago Link

- Our working paper "Deep Learning for Molecular Orbitals" is now available on ChemRxiv Link

- I participated in MLMR's annual materials informatics competition 2024 [Link]

- I attended the "Learning Collective Variables and Coarse Grained Models" workshop organized by Institute of Mathematics and Statistical Innovation (IMSI) at University of Chicago Link

- I attended the "Machine Learning Force Fields" workshop organized by Institute of Mathematics and Statistical Innovation (IMSI) at University of Chicago Link

- I attended the "Machine Learning in Electronic-Structure Theory" workshop organized by Institute of Mathematics and Statistical Innovation (IMSI) at University of Chicago Link

- Our team won the 6th in the Bayesian Optimization Hackathon! We found that Thompson sampling is 2x more efficient in finding high-performing metal-organic framework (MOF) candidates compared to random sampling. [Code] Link

- I participated in the Bayesian Optimization Hackathon for Chemistry and Materials organized by Accelerated Consortium at University of Toronto. Link [Github] Youtube Slides

- I attended the "Materials Informatics: Tutorials and Hands-On" workshop organized by Institute of Mathematics and Statistical Innovation (IMSI) at University of Chicago Link

- Check out my Classical Molecular and Materials Modeling term project presentation Youtube

- I presented a poster at PME admitted student visit weekend

- Our work on isoreticular design of pcu MOFs for CO2 capture is now available in Nature Communications Chemistry Link Behind the paper

- Our Argonne team won Editors' Choice Award for Best Use of High-Performance Data Analysis & Artificial Intelligence by HPCwire Link

- I made a poster for PME Lunar New Year celebration Link

- Our work on MOF+AI has been featured in Argonne News Link

- I joined the Gagliardi group at University of Chicago Link

2023

- I delivered a talk at the CD4DC All Hands Meeting at University of Chicago Link [Photo]

- I started my PhD at the Pritzker School of Molecular Engineering (PME) at University of Chicago

- I delivered a talk at the group meeting at LLNL

- I delivered a talk at the 2023 Artificial Intelligence for Materials Science (AIMS) meeting LinkPresentation

- I made a Youtube video about Yosemite Link

- I delivered a talk at the Computational Chemistry and Materials Science Summer Institute student meeting

- I made a Youtube video about San Francisco Link

- Our paper "End-to-end AI framework for interpretable prediction of molecular and crystal properties" is available on Machine Learning: Science and Technology Link

- The code for GHP-MOFassemble is available on Github Link

- Our paper "GHP-MOFassemble: Diffusion modeling, high throughput screening, and molecular dynamics for rational discovery of novel metal-organic frameworks for carbon capture at scale" is available on Arxiv Link

- I started my internship as a Computational Chemistry and Materials Science (CCMS) Summer Institute Fellow at Lawrence Livermore National Laboratory

- I completed my Predoctoral Appointee position at Argonne National Laboratory

- The Science Olympiad varsity team I coached at Marie Murphy School finished in the 6th place in the nationals. Congrats!

- The Science Olympiad varsity team I coached at Marie Murphy School advanced to the nationals. Congrats!

- I delivered a talk at AIChE Midwest Regional Conference

- Our code for diffusion model-based metal-organic framework (MOF) generation algorithm for carbon capture is now available on GitLab Link

- I accepted PhD offer from UChicago Pritzker School of Molecular Engineering

- I started as a Predoctoral Appointee at Argonne National Laboratory

- I posted my first Youtube video on half marathon training preparation Video

- The Science Olympiad varsity team I coached at Marie Murphy School advanced to the states. Congrats!

- I visited Carnegie Mellon University Materials Science department

- I visited UChicago Pritzker School of Molecular Engineering Photo

- I submitted an abstract to the AIChE Midwest Regional Conference Abstract

- I presented a poster at the MaRDA Annual Meeting Poster

- I wrote a blog post about my experience participating in iQuHack 2023 Blog

- I participated in iQuHack quantum computing hackathon hosted by MIT iQuISE Website Github Blog

- I passed JLPT N1 Certificate

- I participated in the Solid-state Materials Chemistry and Data Science Hackathon (SSMCDST) hosted by Lehigh University Final PresentationWebsite

- I wrote a blog post on my experience as a Master's student in Materials Engineering at Northwestern Blog

- I wrote a blog post on my recent work on i-MAX phases Blog

2022

- Subscribe to my blog post to learn more about computational materials science [Blog]

- Our paper End-to-end AI Framework for Interpretable Prediction of Molecular and Crystal Properties is now available on Arxiv Paper

- I graduated from Northwestern University with a Master's degree in Materials Science and Engineering

- I took the Japanese Language Proficiency Test (JLPT) N1

- I participated in the Battery Informatics & ML Competition hosted by NIST and TRI

- First day of coaching practice for Science Olympiad at Marie Murphy School

- I finished in the 99th place in Abott Chicago 5k Certificate Result

- First day of mentoring students at Nichols Middle School Morning Mentor

- I contributed to XSEDE and NERSC proposals for awarded high-performance computing resources

- I presented a rapid fire research talk on QMT Journal Club meeting Slide

- I delivered a group presentation in the Wolverton group meeting Slide

- I developed code for calculating site-specific chemical similarity of materials Github link

- I attended the Machine Learning for Materials Research (MLMR) Seminar 2022 hosted by UMD Group Picture

- I wrote two extractor scripts for materials data visualization on clowder Slide

- I attended 2022 MaRDA Summer Hackathon at GaTech Github Photo

- I finished in the 38th place in Under Armour Chicago 10K Result

- I presented a poster at the Artificial Intelligence for Materials Science (AIMS) Meeting Poster Presentation

- I presented a poster at the C3S Symposium Poster

- I attended the Argonne Quantum Computing Tutorial

- I started my summer internship as a Research Aide Technical at Argonne National Lab

- I attended the Computational Representation of Materials Workshop hosted by TRI

- Our team won the 4th place in the Stanford Cleantech Challenge Slides

- I presented a research poster at the Materials Data Alliance (MaRDA) Meeting Page

- Our team won the 1st place in the ALCF AI Hackathon [Page]